Programmatic access to bioinformatics tools from EMBL-EBI update: 2017
نویسندگان
چکیده
منابع مشابه
Programmatic access to bioinformatics tools from EMBL-EBI update: 2017
Since 2009 the EMBL-EBI provides free and unrestricted access to several bioinformatics tools via the user's browser as well as programmatically via Web Services APIs. Programmatic access to these tools, which is fundamental to bioinformatics, is increasingly important as more high-throughput data is generated, e.g. from proteomics and metagenomic experiments. Access is available using both the...
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Since 2009 the EMBL-EBI Job Dispatcher framework has provided free access to a range of mainstream sequence analysis applications. These include sequence similarity search services (https://www.ebi.ac.uk/Tools/sss/) such as BLAST, FASTA and PSI-Search, multiple sequence alignment tools (https://www.ebi.ac.uk/Tools/msa/) such as Clustal Omega, MAFFT and T-Coffee, and other sequence analysis tool...
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Proteomics [2] is the large-scale study of proteomes. A proteome [3] is a set of proteins produced in an organism, system, or biological context. We may refer to, for instance, the proteome of a species (for example, Homo sapiens) or an organ (for example, the liver). The proteome is not constant; it differs from cell to cell and changes over time. To some degree, the proteome reflects the unde...
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The EBI RDF platform[1] was released in 2013 and provides access to several EBI databases as RDF Linked Data. The RDF platform provides a SPARQL endpoints and a Linked Data browser to the data in addition to making data dumps available over FTP. At release the RDF platform contained data from the Reactome, BioModels, BioSamples, Gene Expression Atlas and ChEMBL databases in addition to the coll...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2017
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gkx273